Padovaid Project — File Rename & Cleanup Plan
Prepared: 2026-04-05
Status: FINALIZED — Ready for implementation.
Naming Convention Adopted
| QMD source files |
topic-type.qmd (all lowercase, kebab-case) |
fuo-slides.qmd |
| Image folders |
images-topic/ (all lowercase, hyphen) |
images-fuo/ |
| Bibliography files |
refs-topic.bib (all lowercase, hyphen) |
refs-fuo.bib |
Section 1: Image Folders
| 1 |
images/ |
images-fuo/ |
FUO slide images (bacteria.png in FUO.qmd title) |
| 2 |
images_immune/ |
images-immunocompromise-slides/ |
Immunocompromise slide images |
| 3 |
images_malaria/ |
images-malaria/ |
Malaria images |
| 4 |
images3/ |
images-diarrhea-slides/ |
Diarrhea slide images |
| 5 |
images-febrileneutropenia/ |
images-febrile-neutropenia/ |
Add hyphen for readability |
| 6 |
images-immunocompromise/ |
images-immunocompromise-webpage/ |
Used by chapter-immunocompromise.qmd (74 files) |
| 7 |
immunocompromise-images/ |
images-immunocompromise-extra/ |
NOT referenced in any QMD; has 6 extra files vs #6; archive |
| 8 |
intraabdominal_images1/ |
images-intraabdominal-1/ |
Fix underscore, reorder prefix |
| 9 |
intraabdominla_images2/ |
images-intraabdominal-2/ |
TYPO FIX + reorder prefix |
| 10 |
FUO_images/ |
images-fuo-webpage/ |
FUO webpage images |
| 11 |
diarrhea-webpage-images/ |
images-diarrhea-webpage/ |
Reorder prefix |
Section 2: Bibliography Files
| 1 |
FUO_references.bib |
refs-fuo.bib |
Used by FUO_chapter-webpage.qmd |
| 2 |
Diarrhea.bib |
refs-diarrhea-slides.bib |
Older diarrhea bib (42.9K) |
| 3 |
diarrhea-references.bib |
refs-diarrhea.bib |
Used by diarrhea-webpage.qmd; in _quarto.yml |
| 4 |
Malaria.bib |
refs-malaria-slides.bib |
Older malaria bib |
| 5 |
references-malaria-page.bib |
refs-malaria.bib |
Used by chapter-webpage.qmd |
| 6 |
references-febrile.bib |
refs-febrile-neutropenia.bib |
Used by chapter-febrile.qmd |
| 7 |
references-immunocompromise.bib |
refs-immunocompromise.bib |
Used by immunosuppression.qmd + chapter-immunocompromise.qmd |
| 8 |
references-intraabdom1.bib |
refs-intraabdominal-1.bib |
Used by chapter-1-webpage.qmd |
| 9 |
references_pt2.bib |
refs-intraabdominal-2.bib |
Used by chapter2-webpage.qmd + chapter-slides.qmd; in _quarto.yml |
| 10 |
references.bib |
refs-general.bib |
Used by chapter-slides.qmd + intraabdominal1-slides.qmd |
Section 3: QMD Files
3a. Landing Pages (sidebar in _quarto.yml)
| 1 |
Index.qmd |
index.qmd |
Lowercase convention |
| 2 |
Antibiotic.qmd |
antibiotic-principles.qmd |
|
| 3 |
Allergies.qmd |
allergies.qmd |
|
| 4 |
Intraabdominal.qmd |
intraabdominal.qmd |
|
| 5 |
immunosuppression.qmd |
immunosuppression.qmd |
KEEP AS-IS |
| 6 |
febrileneutropenia.qmd |
febrile-neutropenia.qmd |
|
| 7 |
Diarrheapage.qmd |
diarrhea.qmd |
Drop redundant “page” suffix |
| 8 |
Malariapage.qmd |
malaria.qmd |
Drop redundant “page” suffix |
3b. Full Content Webpages
| 9 |
chapter-webpage.qmd |
malaria-webpage.qmd |
Malaria |
| 10 |
chapter-1-webpage.qmd |
intraabdominal-1-webpage.qmd |
Intra-abdominal Part 1 |
| 11 |
chapter2-webpage.qmd |
intraabdominal-2-webpage.qmd |
Intra-abdominal Part 2 |
| 12 |
FUO_chapter-webpage.qmd |
fuo-webpage.qmd |
Fever of Unknown Origin |
| 13 |
diarrhea-webpage.qmd |
diarrhea-webpage.qmd |
KEEP AS-IS |
| 14 |
chapter-immunocompromise.qmd |
immunocompromise-webpage.qmd |
Immunocompromised Host |
| 15 |
chapter-febrile.qmd |
febrile-neutropenia-webpage.qmd |
Febrile Neutropenia |
| 16 |
_diarrhea-content.qmd |
_diarrhea-content.qmd |
KEEP AS-IS — included module |
3c. Slide Presentations
| 17 |
Malaria.qmd |
malaria-slides.qmd |
Malaria RevealJS slides |
| 18 |
FUO.qmd |
fuo-slides.qmd |
FUO RevealJS slides |
| 19 |
diarrhea.qmd |
diarrhea-slides.qmd |
Diarrhea RevealJS slides |
| 20 |
chapter-slides.qmd |
intraabdominal-2-slides.qmd |
Intra-abdominal Part 2 |
| 21 |
intraabdominal1-slides.qmd |
intraabdominal-1-slides.qmd |
Intra-abdominal Part 1 (add hyphen) |
| 22 |
chapter-slides_intrabdominal1.qmd |
intraabdominal-1-slides-v2.qmd |
DIFFERENT content from #21 — older scrollable version; keep |
3d. Stub Pages
| 23 |
Resistance.qmd |
resistance.qmd |
Fix YAML typo (foquartormat) |
| 24 |
IFI.qmd |
ifi.qmd |
Fix YAML typo (foquartormat) |
| 25 |
treviso.qmd |
treviso.qmd |
KEEP AS-IS |
Section 4: Files to DELETE
Immunosuppresion.qmd |
Misspelled stub; immunosuppression.qmd is the correct version |
Malaria2.qmd |
35-line abandoned draft; no unique content vs Malaria.qmd |
Malaria2-speaker.html |
Speaker notes for deleted Malaria2.qmd |
chapter-draft.html |
Old rendered HTML export of immunocompromise chapter; no .qmd source |
chapter-draft_files/ |
Dependency folder for deleted chapter-draft.html |
Generated by Databot on 2026-04-05.